install. numpy.get_include() /home/leonardo/virtual/lib/python3.6/site-packages/numpy/core/include command: /home/leonardo/virtual/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-tzo_jona/shap/setup.py'"'"'; file='"'"'/tmp/pip-install-tzo_jona/shap/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-g05zm_5w Thus, when installing packages created using these tutorials, I've received the "Failed to build wheel" error. creating build/temp.linux-x86_64-3.6/shap copying shap/plots/force.py -> build/lib.linux-x86_64-3.6/shap/plots copying shap/benchmark/methods.py -> build/lib.linux-x86_64-3.6/shap/benchmark The apt python3 code package is named python3-wheel. copying shap/explainers/kernel.py -> build/lib.macosx-10.6-intel-3.6/shap/explainers First of all download this whl file according to your system For 32-bit: numpy1.21.2+mklcp310cp310win32.whl ERROR: Failed building wheel for shap Running setup.py clean for shap Failed to build shap Installing collected packages: shap . copying shap/plots/monitoring.py -> build/lib.macosx-10.6-intel-3.6/shap/plots When downloaded, it can be installed by running the following: In my case, update the pip versin after create the venv, this update pip from 9.0.1 to 20.3.1, Then, I install wheel package after update pip. copying shap/explainers/partition.py -> build/lib.linux-x86_64-3.6/shap/explainers copying shap/explainers/other/coefficent.py -> build/lib.linux-x86_64-3.6/shap/explainers/other You can also check if the package supports your version of Python in the copying shap/common.py -> build/lib.linux-x86_64-3.6/shap You signed in with another tab or window. Installation error in virtualenv on Linux, https://files.pythonhosted.org/packages/a8/77/b504e43e21a2ba543a1ac4696718beb500cfa708af2fb57cb54ce299045c/shap-0.35.0.tar.gz, gcc: error trying to exec 'cc1plus': execvp: No such file or directory. creating build/temp.macosx-10.6-intel-3.6 There are many tutorials out there that explain how to publish a package to PyPi. creating build/lib.macosx-10.6-intel-3.6/shap/explainers/deep copying shap/plots/bar.py -> build/lib.linux-x86_64-3.6/shap/plots /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/numpy/core/include -c shap/_cext.cc -o build/temp.macosx-10.6-intel-3.6/shap/_cext.o install h5py. ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-install-nfj4b1w4/shap/setup.py'"'"'; file='"'"'/private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-install-nfj4b1w4/shap/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-record-nhb7fqct/install-record.txt --single-version-externally-managed --compile --install-headers /Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m/shap Check the logs for full command output.`. copying shap/explainers/deep/deep_pytorch.py -> build/lib.linux-x86_64-3.6/shap/explainers/deep creating build/temp.macosx-10.6-intel-3.6 error This is installed automatically because python3-pip recommends it. command: /home/leonardo/virtual/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-tzo_jona/shap/setup.py'"'"'; file='"'"'/tmp/pip-install-tzo_jona/shap/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-33kyy1ha/install-record.txt --single-version-externally-managed --compile --install-headers /home/leonardo/virtual/include/site/python3.6/shap ERROR: Command errored out with exit status 1: It has worked for me when I have installed these two. What does the power set mean in the construction of Von Neumann universe? Failed to build shap copying shap/explainers/sampling.py -> build/lib.linux-x86_64-3.6/shap/explainers What does ** (double star/asterisk) and * (star/asterisk) do for parameters? creating build/lib.linux-x86_64-3.6/shap copying shap/explainers/pytree.py -> build/lib.linux-x86_64-3.6/shap/explainers The cause was error: invalid command 'bdist_wheel' and Running setup.py bdist_wheel for hddfancontrol error. On what basis are pardoning decisions made by presidents or governors when exercising their pardoning power? copying shap/explainers/bruteforce.py -> build/lib.linux-x86_64-3.6/shap/explainers copying shap/datasets.py -> build/lib.macosx-10.6-intel-3.6/shap creating build/lib.linux-x86_64-3.6/shap/explainers/other My own solution to the above problem is most often to make sure to disable the cached copy by using: pip install --no-cache-dir. copying shap/benchmark/metrics.py -> build/lib.macosx-10.6-intel-3.6/shap/benchmark copying shap/plots/resources/bundle.js -> build/lib.macosx-10.6-intel-3.6/shap/plots/resources This actually solved the case where python --version throws an error, but python3 --version works. It solves the problem. copying shap/explainers/deep/init.py -> build/lib.linux-x86_64-3.6/shap/explainers/deep By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. copying shap/benchmark/methods.py -> build/lib.linux-x86_64-3.6/shap/benchmark copying shap/datasets.py -> build/lib.linux-x86_64-3.6/shap Requirement already satisfied: six>=1.5 in /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages (from python-dateutil>=2.6.1->pandas->shap) (1.13.0) On Red Hat based distribution, please install nmap CLI as follow: I got same error while installing termcolor and I fixed it by reinstalling it . copying shap/benchmark/init.py -> build/lib.linux-x86_64-3.6/shap/benchmark copying shap/explainers/other/lime.py -> build/lib.linux-x86_64-3.6/shap/explainers/other So, the error might simply be a matter of how the developer packaged and deployed the project. copying shap/explainers/gradient.py -> build/lib.macosx-10.6-intel-3.6/shap/explainers copying shap/plots/embedding.py -> build/lib.linux-x86_64-3.6/shap/plots pip install --upgrade pip command to upgrade your pip version, install the creating build/temp.macosx-10.6-intel-3.6/shap It seems that your problem is related to the GNU Compiler Collection (gcc). If you are on Windows, you can also download a suitable .whl file from the People bypassing anti-swear system by using duplicate letters, Python: Python: Having trouble with a code for class, Odoo 13' solution to solve about the employee forget to checkout in odoo attendance. https://www.lfd.uci.edu/~gohlke/pythonlibs/ Having a Python version that isn't supported by the package we're trying to https://www.lfd.uci.edu/~gohlke/pythonlibs/ Installing this too fixes the "failed building wheel" errors for me. copying shap/explainers/other/treegain.py -> build/lib.linux-x86_64-3.6/shap/explainers/other copying shap/explainers/other/lime.py -> build/lib.macosx-10.6-intel-3.6/shap/explainers/other copying shap/explainers/deep/deep_pytorch.py -> build/lib.linux-x86_64-3.6/shap/explainers/deep creating build/lib.macosx-10.6-intel-3.6/shap/explainers copying shap/explainers/other/maple.py -> build/lib.macosx-10.6-intel-3.6/shap/explainers/other command: /Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-install-nfj4b1w4/shap/setup.py'"'"'; file='"'"'/private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-install-nfj4b1w4/shap/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-wheel-ui95jcdv Running setup.py install for shap error Running setup.py bdist_wheel for shap error /usr/lib/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'long_description_content_type' copying shap/plots/embedding.py -> build/lib.linux-x86_64-3.6/shap/plots Having installed packages that clash with the package we are trying to install. After you install wheel and upgrade pip and setuptools, you should be able copying shap/benchmark/methods.py -> build/lib.macosx-10.6-intel-3.6/shap/benchmark copying shap/benchmark/measures.py -> build/lib.linux-x86_64-3.6/shap/benchmark x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.6m -I/home/leonardo/virtual/include/python3.6m -I/home/leonardo/virtual/lib/python3.6/site-packages/numpy/core/include -c shap/_cext.cc -o build/temp.linux-x86_64-3.6/shap/_cext.o If the error is not resolved, try running the pip install command with the copying shap/benchmark/experiments.py -> build/lib.macosx-10.6-intel-3.6/shap/benchmark It looks like you are using OSX 10.6, since we are now at 10.15 it could be an issue with an older OS? copying shap/plots/image.py -> build/lib.macosx-10.6-intel-3.6/shap/plots ---------------------------------------- How about saving the world? install. copying shap/benchmark/measures.py -> build/lib.linux-x86_64-3.6/shap/benchmark copying shap/common.py -> build/lib.macosx-10.6-intel-3.6/shap copying shap/explainers/tf_utils.py -> build/lib.linux-x86_64-3.6/shap/explainers copying shap/explainers/init.py -> build/lib.linux-x86_64-3.6/shap/explainers copying shap/plots/summary.py -> build/lib.linux-x86_64-3.6/shap/plots copying shap/benchmark/models.py -> build/lib.macosx-10.6-intel-3.6/shap/benchmark copying shap/explainers/other/maple.py -> build/lib.linux-x86_64-3.6/shap/explainers/other copying shap/plots/partial_dependence.py -> build/lib.linux-x86_64-3.6/shap/plots Why is it shorter than a normal address? reasons: First, if you are on macOS or Linux, install the prerequisites. command: /Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-install-nfj4b1w4/shap/setup.py'"'"'; file='"'"'/private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-install-nfj4b1w4/shap/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/l6/p8839_gj0wq_m6_2f7dsk5zh0000gn/T/pip-record-nhb7fqct/install-record.txt --single-version-externally-managed --compile --install-headers /Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m/shap Sooner or later we would end up executing this command so better to have this executed first. How to check for #1 being either `d` or `h` with latex3? the package's pypi page. In file included from shap/_cext.cc:3: If that fails for any reason, you get the "Failed building wheel for pycparser" message and pip falls back to installing directly (via setup.py install ). copying shap/benchmark/methods.py -> build/lib.linux-x86_64-3.6/shap/benchmark download an older version. have available wheels for your version of Python. python-wheel, A build-system independent format for source trees, Finding dictionaries which don't have forbidden key-value pairs in Python, Check if key exists in a Python dict in Jinja2 templates, Python: Binary search does not work correctly (Python), Mime: Sending Multipart html emails which contain embedded images, Plot different DataFrames in the same figure in Python. install wordcloud. creating build/temp.linux-x86_64-3.6/shap copying shap/benchmark/models.py -> build/lib.linux-x86_64-3.6/shap/benchmark copying shap/explainers/init.py -> build/lib.linux-x86_64-3.6/shap/explainers Requirement already satisfied: python-dateutil>=2.6.1 in ./virtual/lib/python3.6/site-packages (from pandas->shap) (2.8.0) x86_64-linux-gnu-gcc: error trying to exec 'cc1plus': execvp: No such file or directory copying shap/plots/waterfall.py -> build/lib.linux-x86_64-3.6/shap/plots copying shap/benchmark/metrics.py -> build/lib.linux-x86_64-3.6/shap/benchmark copying shap/benchmark/metrics.py -> build/lib.linux-x86_64-3.6/shap/benchmark ( pip install wheel can fix that -- but it won't fix any build time issues due to system configuration) copying shap/plots/partial_dependence.py -> build/lib.linux-x86_64-3.6/shap/plots python-3.x by. Installing collected packages: shap copying shap/plots/waterfall.py -> build/lib.linux-x86_64-3.6/shap/plots After updating pip, setuptools and wheel, run the following command to copying shap/explainers/other/coefficent.py -> build/lib.macosx-10.6-intel-3.6/shap/explainers/other Please Help! copying shap/explainers/other/lime.py -> build/lib.linux-x86_64-3.6/shap/explainers/other official python.org website and running it. Unfortunately I had to contact the server administrator to install the python-dev package, as this package contains the header files you need to create python extensions. If the .whl files are not available for your version of Python, you can copying shap/explainers/other/treegain.py -> build/lib.linux-x86_64-3.6/shap/explainers/other creating build copying shap/plots/init.py -> build/lib.macosx-10.6-intel-3.6/shap/plots copying shap/plots/init.py -> build/lib.linux-x86_64-3.6/shap/plots setuptools and wheel in this case) Build wheels from the source using install back-ends Jump out and Install the wheels As you can see, it isolated the build back-ends from being installed to one's working site. My own solution to the above problem is most often to make sure to disable the cached copy by using: pip install --no-cache-dir. https://www.lfd.uci.edu/~gohlke/pythonlibs/ copying shap/benchmark/plots.py -> build/lib.linux-x86_64-3.6/shap/benchmark Is there a way to skip wheel generation (. Your error message here is due to the wheel package being missing, which contains the logic required to build the wheels in setup.py bdist_wheel. copying shap/explainers/deep/deep_tf.py -> build/lib.linux-x86_64-3.6/shap/explainers/deep If that doesn't work, you have to install a Python version that is in the copying shap/explainers/linear.py -> build/lib.linux-x86_64-3.6/shap/explainers ERROR: Failed building wheel for shap Running setup.py clean for shap Failed to build shap Installing collected packages: shap Running setup.py install for shap . That said, pip always tries to install packages via wheels as often as it can. Ubuntu breaks that assumption. copying shap/plots/resources/logoSmallGray.png -> build/lib.macosx-10.6-intel-3.6/shap/plots/resources How do I stop the Flickering on Mode 13h? creating build/lib.linux-x86_64-3.6/shap/explainers/other copying shap/explainers/sampling.py -> build/lib.macosx-10.6-intel-3.6/shap/explainers Don't use the default Python 2 that's pre-installed on your Mac because mysqlclient latest version only supports Python 3 (requires Python >=3.5) copying shap/explainers/explainer.py -> build/lib.linux-x86_64-3.6/shap/explainers copying shap/plots/summary.py -> build/lib.linux-x86_64-3.6/shap/plots copying shap/plots/summary.py -> build/lib.linux-x86_64-3.6/shap/plots The second one is wrong: At the time of writing OP, I already had the. copying shap/plots/image.py -> build/lib.linux-x86_64-3.6/shap/plots running build Failed to build shap copying shap/explainers/mimic.py -> build/lib.linux-x86_64-3.6/shap/explainers psycopg2-binary installed. If you are on Linux platform, please make sure that the nmap tool is installed, otherwise the library python-nmap won't work. creating build I'm sure that is not the only reason for the error, but I'm willing to bet that is a major reason for it. We cannot consume PyPI wheels for legal reasons (but that's boring and not technical), but we also can't trust non-pure Python wheels built externally because there are environmental leakages that aren't captured in the wheel tags and which do not align with our internal infrastructure. First, get your Python version and check if your Python installation is 64-bit The error is sometimes caused when the package you are trying to install doesn't You can check if a package has wheels available for a specific Python version in copying shap/explainers/other/random.py -> build/lib.linux-x86_64-3.6/shap/explainers/other Ubuntu breaks that assumption. or 32-bit. From the documentation I read that they first install these packages: sudo apt-get install libxml2-dev libxmlsec1-dev Requirement already satisfied: scipy in ./virtual/lib/python3.6/site-packages (from shap) (1.3.1) pip tries to install packages via wheels as often as it can. Building wheel for shap (setup.py) error Make sure to use the correct command to activate your virtual environment copying shap/benchmark/plots.py -> build/lib.linux-x86_64-3.6/shap/benchmark ^~~~~~~~~~ The error "Failed building wheel for mysqlclient" error occurs for multiple following file. After updating pip, setuptools and wheel, run the following command to copying shap/benchmark/models.py -> build/lib.macosx-10.6-intel-3.6/shap/benchmark If just getting rid of the message is your goal, this may count as a fix, otherwise I'd call this a workaround. running build_py creating build/temp.linux-x86_64-3.6/shap The result was Failed to build hddfancontrol. copying shap/plots/force.py -> build/lib.macosx-10.6-intel-3.6/shap/plots .whl file under "Built Distribution". creating build/lib.linux-x86_64-3.6/shap/explainers When the pip install command is run in verbose mode, the command shows more copying shap/explainers/permutation.py -> build/lib.linux-x86_64-3.6/shap/explainers copying shap/plots/bar.py -> build/lib.linux-x86_64-3.6/shap/plots 1 You need to add the shap module to the Jupyter environment. copying shap/plots/colors.py -> build/lib.linux-x86_64-3.6/shap/plots ), The above is the legacy behavior that is currently the default; we'll switch to PEP 517 by default, sometime in the future, moving us to a standards-based process for this. @K3---rnc None that aren't already deprecated. On Ubuntu 18.04, I ran into this issue because the apt package for wheel does not include the wheel command. Thanks! 3 Answers. /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/stdio.h:108:15: fatal error: 'stdio.h' file not found running build_py #include_next copying shap/plots/monitoring.py -> build/lib.linux-x86_64-3.6/shap/plots copying shap/plots/bar.py -> build/lib.macosx-10.6-intel-3.6/shap/plots by Pillow. creating build/lib.linux-x86_64-3.6 Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? copying shap/plots/dependence.py -> build/lib.linux-x86_64-3.6/shap/plots creating build/lib.linux-x86_64-3.6/shap/explainers Make sure to specify the correct name of the .whl file as your version will
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